Valuable findings
Which factors influence by sleep.
Caffeine, bedtime start, sickness, vitamin D3 and negative emotions significantly and independently influence my sleep in restorative phases. I'll lower my caffeine intake, will go sleep earlier, take sun / D3 every other morning, and try to reduce stress. Detailed analysis is here.
Outdated: The later i'm going to sleep, the less total sleep time i'll get. My optimal sleep time around 21:30 - 22:30 and will stick to it. Explained here.
Outdated: Average intake of 68 mg of caffeine between 8:30 and 13:00 is enough to destroy ~30 minutes of my sleep in restorative phases. Explained here
Increasing Deep Sleep
Pink noise stimulations increase my Deep sleep by ~11 minutes per night. Additional ~1h20m of DEEP sleep per week seems to be a significant effect. Explained here. Update: After having a talk with Frederik Weber, a sleep scientist, i'm a bit sceptical on my results (stims may just increase k-complexes which leads to more deep sleep time, but not because of increasing slow waves amplitude / count which is a main target).
Physical activity increases mood
Physical activity significantly increases my positive emotions and decrease negative emotions. 1 hour training / 10k steps is enough to get a valuable effect. Explained here
Tracking body temperature
Oura ring temperature seems to be accurate and reliable proxy to core body temperature and sensitive to body temperature spikes caused by sickness. Explained here
HRV and sickness
Standing RMSSD seems to be a useful tool which provides insights about illness onset and recovery and helps make a decision of resuming physical activity. Explained here
Increasing HRV with physical activity
Increase in physical activity leads to increase in HRV. Weekly standing HRV more sensitive to physical activity. Explained by weekly and daily analysis.
Relaxation and HRV
I have found that relaxations like massage acutely boost HRV.
HRV and Deep (N3) sleep
I was able to reproduce some studies which tried to asess HRV during Deep (N3, SWS) sleep by using ECG only data. HRV during Deep sleep derived from ECG only data were comparable to HRV derived with both ECG + EEG. It seems ECG signal is enough to assess HRV during midpoint of Deep sleep (but not enough to predict Deep sleep, at least not at EEG accuracy level).
Arrythmia
I weared Shimmer ECG for long term and was able to detect arrythmia (Premature Atrial Contractions, PACs). It occurs 200-400 times per day, sometimes even 1000+. Also i was able to capture paroxysmal tachycardia episode.
Circadian rhythm
I've checked my body temperature circadian rhythm with iButton and it seems to be strong enough. Fitbit Charge 4 wrist temperature data also was accurate enough to reveal diurnal changes. Also i've found and measured power of resting HR diurnal changes.
Sleep health
Comparison to healthy population my sleep is fairly good. But i need to focus on lowering awake time during night.
Accuracy
- Fitbit Charge 5 and 4 have a low agreement for absolute heart rate values, but their trends are pretty consistent. Both devices agree pretty well on steps.
- Oura ring 2.0 sleep staging seems to be in weak agreement compared to EEG device.Withings Sleep staging have a moderate agreement and impressive long term averaged values.
- Fitbit Charge 4 sleep staging have a moderate agreement (better than Oura / Withings) and shows impressive long term averaged values.
- Fitbit Charge 5 sleep staging looks same as Charge 4.
- Manual assessment seems to be a good estimate of total sleep time.
- Oura ring 3.0 improved accuracy with new sleep algorhythm to 75% (F1 score 0.75) compared to multichannel EEG. Thats a good progress, previous generation was able to reach only 60% accuracy on me.
Changelog
I've added changelog to find out fresh news / milestones / changes in my QS framework.
Wearable stack
Every night, one of:
- OpenBCI Cyton EEG: F8-T3, F7-T3, O1-T3, O2-T3, T3-T4 channels (primary)
- Hypnodyne ZMax EEG: F7-Fpz, F8-Fpz channels (as backup / travel)
You can read here about both devices and channel decisions
Wearing 24/7
- ECG / HRV from Shimmer3 EBio (A-I lead). Read here for details
- Core body temperature from GreenTEG Calera (right side of abdomen)
- Lys button (Light)
- Fitbit Charge 6
- Oura ring 3
Every training session
- Polar H10 in addition to Shimmer EBio
- Polar Vantage V3 or Garmin Descent MK2s (only for freediving / diving)
- x2 Stryde sensors (power during running)
- Garmin Rally pedals (power during cycling)
- Log every resistance exercise (mechanical work)
Every morning
- Morning subjective sleep quality questionnaire
- Standing HRV with Movesense MD
- Withings Body Scan (simultaneously with standing HRV)
Health & Wellbeing articles in scientific review style
- Vitamin D - covering Calcium, Vitamin K, Phosporus, Insulin, sun exposure, Vitamin D supplementation dosage, frequency and timing.
- Common cold - covering Zinc and Saline spray usage to shorten sickness duration and improve symptoms.
- Bloodwork - work in progress
- DIY Mouthwash - work in progress
- Metabolic health - work in progress
Coming soon
Data already collected, just need to finalize.
- Fitbit Charge 6 and Oura V3 vs EEG (OpenBCI / ZMax), CBT (Calera) and ECG (Shimmer3)
- Vitamin D and sleep (done)
- Vitamin B12 and sleep (done)
- Compare Fitbit Charge 5 vs 4 (done)
- Sleep stages Fitbit Charge 5 vs Dreem 2 EEG agreement (done)
- Subjective sleep diary vs objective (Dreem 2, Oura, Fitbit Charge 5 and 4, Withings) (done)
- Time in bed and Total sleep time agreement (Dreem 2, Oura, Fitbit Charge 5 and 4, Withings) (done)
- Glucose response to different foods measure by CGM (Freestyle Libre) (done)
- Physical activity and weight / body composition
- Physical activity and waist / hip circumference
- Food intake and weight / body composition
- Food intake and waist / hip circumference
- Check myself for HRV saturation phenomenon
- RHR and sickness
- RHR and physical activity
- Postprandial RHR analysis as attempt to catch allergy (nothing found)
- Excessive food intake after poor sleep (decided not to do)
- Blood Pressure and physical activity (nothing found)
- Blood Pressure and food intake (nothing found)
- Blood Pressure and sleep (nothing found)
Interesting resources
- Gwern Branwen blog. QS and QS Sleep sections. Meta science section explains problems of analysing data.
- Herman de Vries blog. Oura ring analysis and body composition posts looks interesting. But take into account that Oura ring is not accurate for sleep staging and TST.
- Measured.me. Oura ring post analysis looks interesting, but again, take into account that most of oura sleep data is inaccurate [1] [2]. There is R Script for easy import oura raw data [3].
- Seth Roberts blog. Simple Arithmetic task looks interesting and i'm using it right now. Sleep, Vitamin D and other experiments worth reading, but data analysis raises questions. Pictures are broken - just rightclick them to open in new tab and remove "blog." from http address.
- QS Show & Tell. From here i've found interesting and implemented some of examples. Right now i'm using a CGM [1] [2] [3] and i've tried iButton for measuring my body temperature circadian rhythm [4]
- QS Forum contain some interesting topics. Just use search to find interesting things.
- Plews & Prof blog contains interesting posts about CGM [1] [2], fat burn during exercise. Interesting case of reducing visceral fat.
- QuantifiedScientist very good review of tracking devices.
- Michael Lustgarten is correlating his blood biomarkers with food intake and doing interesting review of longevity changes in blood chemistry.
- Andrew Flatt twitter worth reading to understand practical appliance of HRV
- Community Calls log worth searching for interesting topics.
- beepb00p. Some interesting examples of self data analysis and managment [1] [2]
- lifehacky.net, post about Dreem and Oura looks solid
- https://github.com/woop/awesome-quantified-self for a list of interesting resources
- interesting concept, but there is not something to investigate now
- Alexey.io interesting QS stack and real-time dashboards
- 800 days of oura data
- Bruce Rogers blog is a set of interesting experiments in exercise/training field.
- Ben Jabituya blog about EEG devices for sleep
- Wearadian / Circadian Rhythm entrainment VLiDACMel by lrq3000
- Niplav.site QS experiments
Take into account that most QS experimenters doesnt bother with checking accuracy of their devices, blinding, statistical significance, confidence intervals, data distribution analysis, adjusting p-values for multiple comparisons, prone to observer/confirmation bias and other biases. So just add a ton of salt to the QS stories.
Books recommendations
General health and longevity
If you want to know how to improve decision making and account for cognitive biases, increase rationality
Data analysis
Data collection in progress
Weekly
- Few scientific questionnaires
Occasional
- Freestyle Libre CGM (glucose monitoring)
- Kinsa Quickcare (circadian and fever monitoring)
- iButton (circadian)
- Blood tests
- MRI (brain, spine, abdomen)
- NBack
- Anki (using when learn something)
- Food intake log (not using now)
- Mental math, Seth Roberts method (not using now)
- Tracking productivity (not using now)
- Subjective sleep metrics (lowered resolution)